FCFASA affairs are governed by its Constitution. Elections are held biennially.
The FCFASA Executive Committee (EXCOM) is composed of the President, Vice President and five additional members. The regional focus of FCFASA informs the representation on the EXCOM. The EXCOM provides leadership and oversees the implementation of the FCFASA long term plan and annual work programme.
Executive Members [2016 - 2018]
| NAME | POSITION | COUNTRY | |
| Afzal Delbar | President | Mauritius | |
| Emmanuel Mutale | Vice President | Zambia | |
| Sheila Mashiri | Committee Member | Zimbabwe | |
| Philip Wyllie | Committee Member | South Africa | |
| Edward Urio | Committee Member | Tanzania | |
| Guy Kimenyembo | Committee Member | DRC | |
| Desiderio Fernandes | Committee Member | Mozambique |